1.Li S*, Mao M*. (2013). Next generation sequencing reveals genetic landscape of hepatocellular carcinomas. Cancer Letters 340(2), 247-53. *Co-corresponding author.

2.Kan Z*, Zheng H*, Liu X*, Li S*, Barber TD, Gong Z, Gao H, Hao K, Willard MD, Xu J, Hauptschein R, Rejto P, Wang G, Zhang Q, Wang B, Chen R, Wang J, Fernandez J, Lee NP, Zhou W, Lin Z, Peng Z, Yi K, Chen S, Li L, Fan X, Yang J, Ye R, Ju J, Wang K, Estrella H, Deng S, Wulur IH, Liu J, Ehsani ME, Zhang C, Sung WK, Aggarwal A, Poon RT, Fan ST, Wang J, Hardwick J, Reinhard C, Dai H, Li Y, Luk JM, Mao M. (2013). Whole genome sequencing identifies recurrent and actionable mutations in hepatocellular carcinoma. Genome Research 23(9), 1422-33. *Co-first author.

3.Sung WK*, Zheng H*, Li S*, Chen R*, Liu X*, Li Y, Lee NP, Lee WH, Ariyaratne PN, Tennakoon C, Mulawadi FH, Wong KF, Liu AM, Poon RT, Fan ST, Chan KL, Gong Z, Hu Y, Lin Z, Barber TD, Chou WC, Aggarwal A, Hao K, Zhou W, Zhang C, Hardwick J, Buser C, Xu J, Kan Z, Dai H, Mao M, Reinhard C, Wang J, Luk JM. (2012). Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nature Genetics 44, 765-9. *Co-first author.

4.Wu X, Huang H, Wei T, Pandey R, Reinhard C, Li S*, Chen JY*. (2012). Network expansion and pathway enrichment analysis towards biologically significant findings from microarrays. Journal of Integrative Bioinformatics 9(2), 213. *Co-corresponding author.

5.Wei T, Li S. (2010). Development of genomics-based gene expression signature biomarkers to facilitate drug discovery and translational medicine. Current Bioinformatics 5, 109-17.

6.Lee C, Su EW, Li S*, Liao B*. (2010). Using gene-pair differential expression to assess relative contributions of biological processes in defining disease phenotype. A Practical Guide to Bioinformatics Analysis p41-56. *Co-corresponding author.

7.Li S, Zhang HY, Hu CC, Lawrence F, Gallagher KE, Surapaneni A, Estrem ST, Calley JN, Varga G, Dow ER, Chen Y. (2008). Assessment of diet-induced obese rats as an obesity model by comparative functional genomics. Obesity 16, 811-8.

8.Liu J, Campen A, Huang S, Peng SB, Ye X, Palakal M, Dunker AK, Xia Y, Li S. (2008). Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data. BMC Medical Genomics 1, 39. “Highly Accessed” on BioMed Central.

9.Li S, Phong M, Lahn M, Brail L, Sutton S, Lin BK, Thornton D, Liao B. (2007) Retrospective analysis of protein kinase C-beta (PKC-β) expression in lymphoid malignancies and its association with survival in diffuse large B-cell lymphomas. Biology Direct 2, 8.

10.Feng XD, Huang SG, Shou JY, Liao BR, Yingling JM, Ye X, Lin X, Gelbert LM, Su EW, Onyia JE, Li S. (2007). Analysis of pathway activity in primary tumors and NCI60 cell lines using gene expression profiling data. Genomics Proteomics & Bioinformatics 5, 15-24.

11.Xia Y, Campen A, Rigsby D, Guo Y, Feng X, Su EW, Palakal M, Li S. (2007). DGEM – a microarray gene expression database for primary human disease tissues. Molecular Diagnosis & Therapy 11, 145-9.

12.Wang H, Huang S, Shou J, Su EW, Onyia JE, Liao B, Li S. (2006). Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data. BMC Genomics 7, 166.

13.Mamidipalli S, Palakal M, Li S. (2006). OligoMatcher: analysis and selection of specific oligonucleotide sequences for gene silencing by antisense or siRNA. Applied Bioinformatics 5, 121-4.

14.Li S, Li YH, Wei T, Su EW, Duffin K, Liao B. (2006). Too much data, but little inter-changeability: A lesson learned from mining public data on tissue specificity of gene expression. Biology Direct 1, 33.

15.Li S*, Huang S, Peng SB*. (2005). Overexpression of G protein-coupled receptors in cancer cells: Involvement in tumor progression. International Journal of Oncology 27, 1329-40. *Co-corresponding author.

16.Li S, Garrard WT. (2003). The kinetics of V-J joining throughout 3.5 megabases of the mouse Igκ locus fit a constrained diffusion model of nuclear organization. FEBS Letter 536, 125-9.

17.Li S, Cutler G, Liu JJ, Hoey T, Chen L, Schultz PG, Liao J, Ling XB. (2003). A comparative analysis of HGSC and Celera human genome assemblies and gene sets. Bioinformatics 19, 1597-605.

18.Li S, Liao J, Cutler G, Hoey T, Hogenesch JB, Cooke MP, Schultz PG, Ling XB. (2002). Comparative analysis of human genome databases reveals genomic level differences. Genomics 80, 138-9.

19.Li S, Hammer RE, George-Raizen JB, Meyers KC, Garrard WT. (2000). High level preferential rearrangement and transcription of YAC-Based mouse κ immunoglobulin transgenes containing the distal upstream regions of the contig. Journal of Immunology 164, 812-24.

20.Li S, George-Raizen JB, Hammer RE, Garrard WT. (1998) Accurate quantification of expression of transgenes marked with restriction endonuclease site polymorphisms by RT-PCR. BioTechniques 25, 558-62.

21.George JB, Li S, Garrard WT. (1995). Yeast artificial chromosome contigs reveal that distal variable region genes resides at least 3 megabases from joining regions in the murine immunoglobulin κ locus. Proc. Natl. Acad. Sci. USA. 92, 12421-5.